One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2019/07/07/compare-matrices_2019-07-07.130452_cjuCm8/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2019/07/07/compare-matrices_2019-07-07.130452_cjuCm8/compare-matrices.tab

One-to-n matrix alignment; reference matrix: dyads_test_vs_ctrl_m1_shift6 ; 22 matrices ; sort_field=rank_mean

Matrix nameAligned logoscor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
dyads_test_vs_ctrl_m1_shift6 (dyads_test_vs_ctrl_m1)                         
; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=11; shift=6; ncol=23; ------cmAAACCCTar------
; Alignment reference
a	0	0	0	0	0	0	33	48	133	124	136	33	3	0	1	78	42	0	0	0	0	0	0
c	0	0	0	0	0	0	53	38	0	3	3	107	137	137	0	26	23	0	0	0	0	0	0
g	0	0	0	0	0	0	21	22	4	3	2	0	1	4	0	12	41	0	0	0	0	0	0
t	0	0	0	0	0	0	34	33	4	11	0	1	0	0	140	25	35	0	0	0	0	0	0
AT1G72740_MA1353.1_JASPAR_shift5 (AT1G72740:MA1353.1:JASPAR) 0.919 0.674 8.971 0.937 0.957 2 3 3 2 2 2.400 1 
; dyads_test_vs_ctrl_m1 versus AT1G72740_MA1353.1_JASPAR (AT1G72740:MA1353.1:JASPAR); m=1/21; ncol2=15; w=11; offset=-1; strand=D; shift=5; score=    2.4; -----cctAAACCCTAAwyc---
; cor=0.919; Ncor=0.674; logoDP=8.971; NsEucl=0.937; NSW=0.957; rcor=2; rNcor=3; rlogoDP=3; rNsEucl=2; rNSW=2; rank_mean=2.400; match_rank=1
a	0	0	0	0	0	62	69	59	214	282	282	10	0	0	0	289	242	138	9	37	0	0	0
c	0	0	0	0	0	154	159	46	3	3	0	281	291	291	0	0	0	41	129	157	0	0	0
g	0	0	0	0	0	23	34	51	22	2	9	0	0	0	0	1	49	2	16	27	0	0	0
t	0	0	0	0	0	52	29	135	52	4	0	0	0	0	291	1	0	110	137	70	0	0	0
0100010593_M1389_1.02_CISBP_shift8 (0100010593:M1389_1.02:CISBP) 0.899 0.674 4.164 0.924 0.948 3 2 17 4 3 5.800 2 
; dyads_test_vs_ctrl_m1 versus 0100010593_M1389_1.02_CISBP (0100010593:M1389_1.02:CISBP); m=2/21; ncol2=10; w=9; offset=2; strand=D; shift=8; score=    5.8; --------wwAMCCTarw-----
; cor=0.899; Ncor=0.674; logoDP=4.164; NsEucl=0.924; NSW=0.948; rcor=3; rNcor=2; rlogoDP=17; rNsEucl=4; rNSW=3; rank_mean=5.800; match_rank=2
a	0	0	0	0	0	0	0	0	39	41	78	27	5	9	1	59	34	28	0	0	0	0	0
c	0	0	0	0	0	0	0	0	10	6	0	70	87	84	5	11	18	24	0	0	0	0	0
g	0	0	0	0	0	0	0	0	20	5	15	0	3	4	2	16	27	19	0	0	0	0	0
t	0	0	0	0	0	0	0	0	31	48	7	3	5	3	92	14	21	29	0	0	0	0	0
estExt_fgenesh1_pg.C_Chr_03.00010061_M1394_1.02_CISBP_shift8 (estExt_fgenesh1_pg.C_Chr_03.00010061:M1394_1.02:CISBP) 0.840 0.688 3.639 0.906 0.921 13 1 18 14 11 11.400 12 
; dyads_test_vs_ctrl_m1 versus estExt_fgenesh1_pg.C_Chr_03.00010061_M1394_1.02_CISBP (estExt_fgenesh1_pg.C_Chr_03.00010061:M1394_1.02:CISBP); m=12/21; ncol2=9; w=9; offset=2; strand=D; shift=8; score=   11.4; --------wwrmCCYar------
; cor=0.840; Ncor=0.688; logoDP=3.639; NsEucl=0.906; NSW=0.921; rcor=13; rNcor=1; rlogoDP=18; rNsEucl=14; rNSW=11; rank_mean=11.400; match_rank=12
a	0	0	0	0	0	0	0	0	30	44	56	47	3	8	0	51	27	0	0	0	0	0	0
c	0	0	0	0	0	0	0	0	22	7	3	51	97	88	29	18	21	0	0	0	0	0	0
g	0	0	0	0	0	0	0	0	17	12	26	0	0	4	3	14	33	0	0	0	0	0	0
t	0	0	0	0	0	0	0	0	31	37	15	2	0	0	68	17	19	0	0	0	0	0	0
TRB2_MA1073.1_JASPAR_shift9 (TRB2:MA1073.1:JASPAR) 0.801 0.583 5.962 0.892 0.906 17 5 8 18 16 12.800 16 
; dyads_test_vs_ctrl_m1 versus TRB2_MA1073.1_JASPAR (TRB2:MA1073.1:JASPAR); m=16/21; ncol2=8; w=8; offset=3; strand=D; shift=9; score=   12.8; ---------wrmCCTAr------
; cor=0.801; Ncor=0.583; logoDP=5.962; NsEucl=0.892; NSW=0.906; rcor=17; rNcor=5; rlogoDP=8; rNsEucl=18; rNSW=16; rank_mean=12.800; match_rank=16
a	0	0	0	0	0	0	0	0	0	368	349	372	0	0	0	980	454	0	0	0	0	0	0
c	0	0	0	0	0	0	0	0	0	126	0	628	1000	1000	6	0	74	0	0	0	0	0	0
g	0	0	0	0	0	0	0	0	0	69	611	0	0	0	0	7	398	0	0	0	0	0	0
t	0	0	0	0	0	0	0	0	0	437	40	0	0	0	994	13	74	0	0	0	0	0	0